species:   Rhsol
pid:       PID0581
parent:    Rhi-milR-21
paralog:   
locus:     KB317742.1:112670-112782
matures:   ['AGCGAGGUAGAACAAGUAAGUCC', 'UCUUGCAUUUGCCUUGGAAA']
srr:       SRR1994875
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994875.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994875.cram KB317742.1:112670-112782

0 out of bounds
12 alignments
9 proper strand
5 stranded perfect matches

          ************************                                 ***************************                   
UAAAAAGAAUUUCUCUUGCAUUUGCCUUGGAAAAGAGGUCUUUUGUAUUUAAUGGACUUCAUAACCCGAUAGCGAGGUAGAACAAGUAAGUCCAUAGUUUUUUUUAACACCUG
(((((((((((...(((((.(((((((((.....(((((((.(((....))).)))))))............)))))))))....))))).....))))))))))).......
----------------------------------------------------------------------AGCGAGGUAGAACAAGUAAGUCC-------------------- l=23 a=0 c
-------------UCUUGCAUUUGCCUUGGAAA-------------------------------------------------------------------------------- l=20 a=0 c*
---------------------------------------------------------------------UAGCGAGGUAGAACAAGUAAGUCCA------------------- l=25 a=2 ma
------------CUCUUGCAUUUGCCUUGGAAAA------------------------------------------------------------------------------- l=22 a=0 ma*

----------------------------------------------------------------------AGCGAGGUAGAACAAGUAAGUCa-------------------- l=23 a=1 
---------------------------------------------------------------------UAGCGAGGUAGAACAAGUAAG----------------------- l=21 a=1 
---------------------------------------------------------------------UAGCGAGGUAGAACAAGUAAGUC--------------------- l=23 a=1 
---------------------------------------------------------------------UAGCGAGGUAGAACAAGUAAGUCa-------------------- l=24 a=3 
---------------------------------------------------------------------UAGCGAGGUAGAACAAGUAAGUCCA------------------- l=25 a=2 (ma)
--------AUUUCUCUUGCAUUUGCCUUGGA---------------------------------------------------------------------------------- l=23 a=1 

mb-01110
ax-1001001
ku-01
ss-101010101000
fn-001
